A new aging atlas created by researchers from HHMI’s Janelia Research Campus, Baylor College of Medicine, and Creighton University School of Medicine provides a detailed view of how cells and tissues in roundworms age. This open-access resource allows scientists to study gene expression changes over time and develop tissue-specific aging clocks. The atlas also includes a germ cell fate trajectory map and insights into polyadenylation, offering new understanding of aging mechanisms and serving as a valuable resource for further research. Credit: SciTechDaily.com
A new aging atlas reveals cellular and tissue aging in roundworms, aiding anti-aging research with insights into gene expression, tissue-specific aging clocks, and polyadenylation, and serves as an open-access resource for scientists.
A new aging atlas provides scientists with a detailed view of how individual cells and tissues in worms age, and how various lifespan-extending strategies might slow down or halt the aging process.
Aging impacts all the tissues in our body – from our muscles to our skin. Figuring out how individual tissues and cells age could help researchers better understand the aging process and aid in the development of anti-aging treatments.
Due to their short lifespans, simple body plans, and genetic similarity to humans, many researchers study aging in roundworms. To look at aging at the level of tissues and cells, a team of researchers from HHMI’s Janelia Research Campus, Baylor College of Medicine, and Creighton University School of Medicine profiled gene expression in each cell of adult roundworms at different times during the aging process. They also profiled long-lived strains of worms.
Creation of the Transcriptomic Cell Atlas
The researchers compiled their results into a complete transcriptomic cell atlas of aging in roundworms. The open-access atlas allows scientists to look at what genes are being expressed in all the worm’s cells at the same time and how gene expression changes over time, both for wild-type worms and worms with extended lifespans.
Using the atlas, the researchers developed tissue-specific “aging clocks,” predictive models they used to tease out the unique aging features of different tissues. The researchers used these clocks to better understand the anti-aging mechanisms in long-lived strains of worms.
Germ Cell Fate Trajectory and Polyadenylation
The researchers also built the first germ cell fate trajectory map that follows how reproductive cells develop over time, enabling the team to discover age-related changes in cell makeup and gene expression in different stages of reproductive cells.
The atlas also allowed the team to get a view of polyadenylation, a key mechanism for gene regulation and protein diversification, across the entire worm as it aged. They discovered a series of age-related changes in these events in different cell types, suggesting a previously unknown link between this mechanism and aging.
The new findings not only give researchers insight into aging on the molecular level but the new open-access atlas and accompanying user-friendly data portal also serve as a resource for other researchers.
Reference: “Aging atlas reveals cell-type-specific effects of pro-longevity strategies” by Shihong Max Gao, Yanyan Qi, Qinghao Zhang, Youchen Guan, Yi-Tang Lee, Lang Ding, Lihua Wang, Aaron S. Mohammed, Hongjie Li, Yusi Fu and Meng C. Wang, 30 May 2024, Nature Aging.
DOI: 10.1038/s43587-024-00631-1
